Phylodynamic Datasets - Data
Click the link on the left for the webpage, or download the zipped data on the right. The zipped data files were last updated on 1st June 2014
The scripts used to help generate the data sets are also downloadable from a zipped file Rscripts.zip . Note that these assume that files from GenBank or other databases have been downloaded and contain hard coded path names and some manual processing is still required.
| Name(Link) | Abbrev | Family | Type | Structure | Infects species | Vector | Zipped Data |
| Bluetongue Virus | BTV | Orbivirus, family Reoviridae | dsRNA | 10 segments | Sheep, and Cattle | Culicoides(midges) | BlueTongue.zip |
| African Horse Sickness | AHSV | Orbivirus, family Reoviridae | dsRNA | 10 segments | Horses, mules, donkeys | Culicoides(midges) and possibly others | AfricaHorseSickness.zip |
| African Swine Fever | ASFV | Asfarviridae | dsDNA | Linear genome (150 genes) | Swine | Arthropod (ticks) | AfricanSwineFever |
| Bovine Viral Diarrhoea Virus | BVDV | Pestivirus, family Flaviviridae | (+)ssRNA | One ORF(polyprotein) | Cattle | (Direct) | BovineViralDiarrhoea.zip |
| Classical Swine Fever Virus | CSFV | Pestivirus, family Flaviviridae | (+)ssRNA | One ORF(polyprotein) | Swine | (Direct) | ClassicalSwineFever |
| Foot and Mouth Disease Virus | FMDV | Aphthovirus, family Picornaviridae | (+)ssRNA | One ORF | Cattle, Sheep, Pigs (and others) | (Direct) | FootAndMouth.zip |
| Avian Influenza Virus | AIV | Orthomyxoviridae | (-)ssRNA | 8 segments | Birds, and mammals | (Direct) | AvianInfluenza.zip |
| Schmallenberg Virus | SBV | Orthobunyavirus, family Bunyaviridae | (-)ssRNA | 3 segments | Cattle and Sheep | Arthropod, and Culicoides(ticks & midges) | Schmallenberg.zip |
