EPIC Scotland Modelling

Welcome to the EPIC Scotland Modelling webpages. Here you will find the epidemiological modelling code developed by EPIC members.

Code, built applications, data, and documents are in GitHub repositories: https://github.com/EPICScotland

Projects

PhylodynamicDataSets

PhylodynamicDataSets contains reference sequence data and trees for pathogens of interest to EPIC.
It also contains some R utility script files used to generate the data where applicable.

PhylodynamicDataSets webpages are live at: http://epicscotland.github.io/PhylodynamicDataSets

(the repository data and html pages are in the gh-pages branch of https://github.com/EPICScotland/PhylodynamicDataSets)


Broadwick

Main page

 http://epicscotland.github.io/broadwick.html

Broadwick

Broadwick is a java framework for creating and running epidemiological models
Get the code from: https://github.com/EPICScotland/Broadwick

BroadwickTutorial

BroadwickTutorial contains tutorial materials on how to use the Broadwick Framework, and includes code stubs that you convert into working code as part of the tutorial.
Get the code from https://github.com/EPICScotland/BroadwickTutorial

BroadwickExamples

BroadwickExamples contains some simple stochastic compartmental models written within the Broadwick framework.
Get the code from https://github.com/EPICScotland/BroadwickExamples

MovementSimulations

The MovementSimulations repository is for movement simulation code and test data, and contains the AnimalMovementSimulations java project.
Get the code from: https://github.com/EPICScotland/MovementSimulations