Broadwick 1.2 API

Packages

Package	Description
broadwick	Provides for entry into Broadwick, the framework for epidemiological modelling.
broadwick.abc	Package for Approximate Bayesian Computation.
broadwick.concurrent	The package contains several classes for concurrent programming.
broadwick.config	The package contains several classes for interacting with the configuration files for Broadwick.
broadwick.config.generated
broadwick.data	Package to provide an interface to the data files for the project.
broadwick.data.readers	Package to provide an interface to the data files for the project.
broadwick.graph	This package contains classes for reading and manipulating graphs.
broadwick.graph.algorithms	This package contains several useful algorithms for acting on graphs.
broadwick.graph.writer	This package contains classes for saving graphs in various formats.
broadwick.grid	This package contains classes to utilise the grid capcbilities of Broadwick.
broadwick.io	Provides useful IO utilities.
broadwick.math	Provides various math functions.
broadwick.model	This package contains the base classes and interfaces for the definition of models for the Broadwick framework.
broadwick.montecarlo	Monte Carlo simulation package.
broadwick.montecarlo.acceptor	All Monte Carlo acceptance criteria can be found in this package.
broadwick.montecarlo.markovchain	This package contains classes for generating Monte Carlo Markov Chains.
broadwick.montecarlo.markovchain.controller	This package contains classes for controlling the Markov chain e.g determining when to terminate the chain.
broadwick.montecarlo.markovchain.observer	This package contains classes for observing Markov Chains.
broadwick.montecarlo.markovchain.proposal	This package contains classes for generating paths or chains for Monte Carlo Markov Chains.
broadwick.odesolver	A package for ODE solvers.
broadwick.phylo	This package contains parsers for phylogenetic trees.
broadwick.rng	Provides simple API for generating random numbers.
broadwick.statistics	This package contains classes for performing simple statistical analysis.
broadwick.statistics.distributions	This package contains classes for defining distributions, including user defined ones.
broadwick.statistics.regression	Statistical routines for Broadwick involving multivariate data.
broadwick.stochastic	Provides classes for solving models stochastically.
broadwick.stochastic.algorithms	Provides algorithms to implement the stochastic processes.
broadwick.utils	Provides algorithms to implement the stochastic processes.
broadwick.xml	Provides useful classes for manipulating the XML used in Broadwick.