All Classes
AbcAbsDistance
AbcController
AbcDistance
AbcMaxNumStepController
AbcModel
AbcNamedQuantity
AbcPriorsSampler
AbstractTauLeapingBase
AmountManager
Animal
ApproxBayesianComp
ArrayUtils
BatchedMovementsFileReader
Broadwick
BroadwickConstants
BroadwickException
BroadwickIOException
BroadwickVersion
CliOptions
CloneUtils
ConfigValidationErrors
ConfigValidationErrors.Status
ConfigValidator
Constants
Consumer
ContinuousDistribution
ContinuousMultivariateDistribution
CustomTags
CustomTags.CustomTag
DatabaseImpl
Databases
DataFileReader
DataFiles
DataFiles.BatchMovementFile
DataFiles.DirectedMovementFile
DataFiles.FullMovementFile
DataFiles.LocationsFile
DataFiles.PopulationFile
DataFiles.TestsFile
DataReader
DefaultController
DefaultOdeController
DepthFirstIterator
DirectedGraph
DirectedMovementsFileReader
DiscreteDistribution
Edge
EdgeAttribute
EdgeList
EdgeType
Executor
Executor.Status
Factorial
FileInput
FileInputIterator
FileOutput
FileUtils
FullMovementsFileReader
GaussianPrior
GillespieSimple
Graph
GraphMl
GraphViz
GraphWriter
H2Database
HypergeometricDistribution
IntegerDistribution
LifeHistoryType
LocalPoolExecutor
Location
LocationsFileReader
LoggingFacade
Logs
Logs.Console
Logs.File
Lookup
MarkovChain
MarkovChainController
MarkovChainMaxNumStepController
MarkovChainMonteCarlo
MarkovChainObserver
MarkovNormalProposal
MarkovProposalFunction
MarkovStepGenerator
Matrix
MetropolisHastings
Model
ModelParameterException
Models
Models.Model
Models.Model.Priors
MonteCarlo
MonteCarloAcceptor
MonteCarloDefaultResults
MonteCarloResults
MonteCarloScenario
MonteCarloStep
Movement
MovementsComparator
MultinomialDistribution
MultivariateNormalDistribution
NewickTreeParser
Normal
NullOutputStream
ObjectFactory
Observer
Observer
Ode
OdeController
OdeSolver
OdeSolver.ThetaQueue
Pair
Parameter
PhyloNode
Poison
PopulationsFileReader
PopulationType
Prior
Producer
Project
Project.Data
RNG
RNG.Generator
RngException
RungeKutta4
Samples
SetOperations
ShortestPath
SimpleLinearRegression
SimulationController
SimulationEvent
SimulationException
SimulationState
StochasticSimulator
TauLeaping
TauLeapingFixedStep
Test
TestsFileReader
TransitionKernel
Tree
TruncatedMultivariateNormalDistribution
TruncatedNormalDistribution
UndirectedGraph
UniformPrior
Vector
Vertex
VertexAttribute
XmlParser