A B C D E F G I N O P R S T W

A

acc - Variable in class broadwick.statistics.SamplesTest

ArrayUtilsTest - Class in broadwick.utils

ArrayUtilsTest() - Constructor for class broadwick.utils.ArrayUtilsTest

B

broadwick - package broadwick

broadwick.config - package broadwick.config

broadwick.data - package broadwick.data

broadwick.graph - package broadwick.graph

broadwick.grid - package broadwick.grid

broadwick.io - package broadwick.io

broadwick.model - package broadwick.model

broadwick.phylo - package broadwick.phylo

broadwick.rng - package broadwick.rng

broadwick.simulation - package broadwick.simulation

broadwick.simulation.mcmc - package broadwick.simulation.mcmc

broadwick.statistics - package broadwick.statistics

broadwick.statistics.distributions - package broadwick.statistics.distributions

broadwick.stochastic - package broadwick.stochastic

broadwick.stochastic.algorithms - package broadwick.stochastic.algorithms

broadwick.utils - package broadwick.utils

BroadwickConfigTestSuite - Class in broadwick.config

Test Suite for broadwick.config package.

BroadwickConfigTestSuite() - Constructor for class broadwick.config.BroadwickConfigTestSuite

BroadwickDataTestSuite - Class in broadwick.data

Test Suite for broadwick.data package.

BroadwickDataTestSuite() - Constructor for class broadwick.data.BroadwickDataTestSuite

BroadwickGraphTestSuite - Class in broadwick.graph

Test Suite for broadwick.graph package.

BroadwickGraphTestSuite() - Constructor for class broadwick.graph.BroadwickGraphTestSuite

BroadwickGridTestSuite - Class in broadwick.grid

Test Suite for broadwick.grid package.

BroadwickGridTestSuite() - Constructor for class broadwick.grid.BroadwickGridTestSuite

BroadwickIoTestSuite - Class in broadwick.io

Test Suite for broadwick.io package.

BroadwickIoTestSuite() - Constructor for class broadwick.io.BroadwickIoTestSuite

BroadwickModelTestSuite - Class in broadwick.model

Test Suite for broadwick.model package.

BroadwickModelTestSuite() - Constructor for class broadwick.model.BroadwickModelTestSuite

BroadwickPhyloTestSuite - Class in broadwick.phylo

Test Suite for broadwick.model package.

BroadwickPhyloTestSuite() - Constructor for class broadwick.phylo.BroadwickPhyloTestSuite

BroadwickRngTestSuite - Class in broadwick.rng

Test Suite for broadwick.rng package.

BroadwickRngTestSuite() - Constructor for class broadwick.rng.BroadwickRngTestSuite

BroadwickSimulationMCMCTestSuite - Class in broadwick.simulation.mcmc

Test Suite for broadwick.simulation.mcmc package.

BroadwickSimulationMCMCTestSuite() - Constructor for class broadwick.simulation.mcmc.BroadwickSimulationMCMCTestSuite

BroadwickSimulationTestSuite - Class in broadwick.simulation

Test Suite for broadwick.simulation package.

BroadwickSimulationTestSuite() - Constructor for class broadwick.simulation.BroadwickSimulationTestSuite

BroadwickStatisticsDistributionsTestSuite - Class in broadwick.statistics.distributions

BroadwickStatisticsDistributionsTestSuite() - Constructor for class broadwick.statistics.distributions.BroadwickStatisticsDistributionsTestSuite

BroadwickStatisticsTestSuite - Class in broadwick.statistics

BroadwickStatisticsTestSuite() - Constructor for class broadwick.statistics.BroadwickStatisticsTestSuite

BroadwickStochasticAlgorithmsTestSuite - Class in broadwick.stochastic.algorithms

Test Suite for broadwick.stochastic.algorithms package.

BroadwickStochasticAlgorithmsTestSuite() - Constructor for class broadwick.stochastic.algorithms.BroadwickStochasticAlgorithmsTestSuite

BroadwickStochasticTestSuite - Class in broadwick.stochastic

Test Suite for broadwick.stochastic package.

BroadwickStochasticTestSuite() - Constructor for class broadwick.stochastic.BroadwickStochasticTestSuite

BroadwickTestSuite - Class in broadwick

Test Suite for broadwick.simulation package.

BroadwickTestSuite() - Constructor for class broadwick.BroadwickTestSuite

BroadwickUtilsTestSuite - Class in broadwick.utils

Test Suite for broadwick.utils package.

BroadwickUtilsTestSuite() - Constructor for class broadwick.utils.BroadwickUtilsTestSuite

C

checkTree(Tree<PhyloNode, Edge<PhyloNode>>) - Method in class broadwick.phylo.NewickTreeParserTest

Several of the methods here generate the same tree (using different optional braces etc in the Newick format), this method tests the outcomes.

checkTreeWithBranchName(Tree<PhyloNode, Edge<PhyloNode>>) - Method in class broadwick.phylo.NewickTreeParserTest

checkTreeWithNestedBranches(Tree<PhyloNode, Edge<PhyloNode>>) - Method in class broadwick.phylo.NewickTreeParserTest

checkTreeWithNoBranchLengths(Tree<PhyloNode, Edge<PhyloNode>>) - Method in class broadwick.phylo.NewickTreeParserTest

checkTreeWithOnlyRootNode(Tree<PhyloNode, Edge<PhyloNode>>) - Method in class broadwick.phylo.NewickTreeParserTest

checkTreeWithWithBranchNamesWithoutBranchLengths(Tree<PhyloNode, Edge<PhyloNode>>) - Method in class broadwick.phylo.NewickTreeParserTest

classWatchman - Static variable in class broadwick.CliOptionsTest

classWatchman - Static variable in class broadwick.config.ConfigValidationErrorsTest

classWatchman - Static variable in class broadwick.config.ConfigValidatorTest

classWatchman - Static variable in class broadwick.data.DataReaderTest

classWatchman - Static variable in class broadwick.graph.DepthFirstIteratorTest

classWatchman - Static variable in class broadwick.io.FileInputTest

classWatchman - Static variable in class broadwick.io.FileOutputTest

classWatchman - Static variable in class broadwick.io.FileUtilsTest

classWatchman - Static variable in class broadwick.phylo.NewickTreeParserTest

classWatchman - Static variable in class broadwick.statistics.distributions.IntegerDistributionTest

classWatchman - Static variable in class broadwick.statistics.SamplesTest

classWatchman - Static variable in class broadwick.stochastic.StochasticSimulatorTest

classWatchman - Static variable in class broadwick.utils.ArrayUtilsTest

CliOptionsTest - Class in broadwick

Test cases for broadwick.CliOptions class.

CliOptionsTest() - Constructor for class broadwick.CliOptionsTest

configFile - Variable in class broadwick.CliOptionsTest

configFileOpts - Variable in class broadwick.CliOptionsTest

ConfigValidationErrorsTest - Class in broadwick.config

Test cases for broadwick.config.ConfigValidatorErrors class.

ConfigValidationErrorsTest() - Constructor for class broadwick.config.ConfigValidationErrorsTest

ConfigValidatorTest - Class in broadwick.config

Test cases for broadwick.config.ConfigValidator class.

ConfigValidatorTest() - Constructor for class broadwick.config.ConfigValidatorTest

createTree(int) - Method in class broadwick.graph.DepthFirstIteratorTest

D

DataReaderTest - Class in broadwick.data

Test cases for broadwick.data.DataReader class.

DataReaderTest() - Constructor for class broadwick.data.DataReaderTest

DepthFirstIteratorTest - Class in broadwick.graph

DepthFirstIteratorTest() - Constructor for class broadwick.graph.DepthFirstIteratorTest

E

exception - Variable in class broadwick.CliOptionsTest

F

FileInputTest - Class in broadwick.io

Test cases for broadwick.io.FileInput class.

FileInputTest() - Constructor for class broadwick.io.FileInputTest

FileOutputTest - Class in broadwick.io

Test cases for broadwick.io.FileOutput class.

FileOutputTest() - Constructor for class broadwick.io.FileOutputTest

FileUtilsTest - Class in broadwick.io

Test cases for broadwick.io.FileUtils class.

FileUtilsTest() - Constructor for class broadwick.io.FileUtilsTest

finished() - Method in class broadwick.stochastic.StochasticSimulatorTest.ObserverImpl

G

getName() - Method in class broadwick.stochastic.StochasticSimulatorTest.StochasticSimulatorImpl

I

IntegerDistributionTest - Class in broadwick.statistics.distributions

IntegerDistributionTest() - Constructor for class broadwick.statistics.distributions.IntegerDistributionTest

N

NewickTreeParserTest - Class in broadwick.phylo

Test cases for broadwick.phylo.NewickTreeParserTest class.

NewickTreeParserTest() - Constructor for class broadwick.phylo.NewickTreeParserTest

O

observeEvent(SimulationEvent, double, int) - Method in class broadwick.stochastic.StochasticSimulatorTest.ObserverImpl

observerImpl - Variable in class broadwick.stochastic.StochasticSimulatorTest

ObserverImpl(StochasticSimulator) - Constructor for class broadwick.stochastic.StochasticSimulatorTest.ObserverImpl

P

performStep() - Method in class broadwick.stochastic.StochasticSimulatorTest.StochasticSimulatorImpl

R

reinitialize() - Method in class broadwick.stochastic.StochasticSimulatorTest.StochasticSimulatorImpl

S

SamplesTest - Class in broadwick.statistics

SamplesTest() - Constructor for class broadwick.statistics.SamplesTest

setRngSeed(int) - Method in class broadwick.stochastic.StochasticSimulatorTest.StochasticSimulatorImpl

setUp() - Method in class broadwick.BroadwickTestSuite

setUp() - Method in class broadwick.CliOptionsTest

setUp() - Method in class broadwick.config.BroadwickConfigTestSuite

setUp() - Method in class broadwick.config.ConfigValidationErrorsTest

setUp() - Method in class broadwick.config.ConfigValidatorTest

setUp() - Method in class broadwick.data.BroadwickDataTestSuite

setUp() - Method in class broadwick.data.DataReaderTest

setUp() - Method in class broadwick.graph.BroadwickGraphTestSuite

setUp() - Method in class broadwick.graph.DepthFirstIteratorTest

setUp() - Method in class broadwick.grid.BroadwickGridTestSuite

setUp() - Method in class broadwick.io.BroadwickIoTestSuite

setUp() - Method in class broadwick.io.FileInputTest

setUp() - Method in class broadwick.io.FileOutputTest

setUp() - Method in class broadwick.io.FileUtilsTest

setUp() - Method in class broadwick.model.BroadwickModelTestSuite

setUp() - Method in class broadwick.phylo.BroadwickPhyloTestSuite

setUp() - Method in class broadwick.phylo.NewickTreeParserTest

setUp() - Method in class broadwick.rng.BroadwickRngTestSuite

setUp() - Method in class broadwick.simulation.BroadwickSimulationTestSuite

setUp() - Method in class broadwick.simulation.mcmc.BroadwickSimulationMCMCTestSuite

setUp() - Method in class broadwick.statistics.BroadwickStatisticsTestSuite

setUp() - Method in class broadwick.statistics.distributions.BroadwickStatisticsDistributionsTestSuite

setUp() - Method in class broadwick.statistics.distributions.IntegerDistributionTest

setUp() - Method in class broadwick.statistics.SamplesTest

setUp() - Method in class broadwick.stochastic.algorithms.BroadwickStochasticAlgorithmsTestSuite

setUp() - Method in class broadwick.stochastic.BroadwickStochasticTestSuite

setUp() - Method in class broadwick.stochastic.StochasticSimulatorTest

setUp() - Method in class broadwick.utils.ArrayUtilsTest

setUp() - Method in class broadwick.utils.BroadwickUtilsTestSuite

setUpClass() - Static method in class broadwick.BroadwickTestSuite

setUpClass() - Static method in class broadwick.CliOptionsTest

setUpClass() - Static method in class broadwick.config.BroadwickConfigTestSuite

setUpClass() - Static method in class broadwick.config.ConfigValidationErrorsTest

setUpClass() - Static method in class broadwick.config.ConfigValidatorTest

setUpClass() - Static method in class broadwick.data.BroadwickDataTestSuite

setUpClass() - Static method in class broadwick.data.DataReaderTest

setUpClass() - Static method in class broadwick.graph.BroadwickGraphTestSuite

setUpClass() - Static method in class broadwick.graph.DepthFirstIteratorTest

setUpClass() - Static method in class broadwick.grid.BroadwickGridTestSuite

setUpClass() - Static method in class broadwick.io.BroadwickIoTestSuite

setUpClass() - Static method in class broadwick.io.FileInputTest

setUpClass() - Static method in class broadwick.io.FileOutputTest

setUpClass() - Static method in class broadwick.io.FileUtilsTest

setUpClass() - Static method in class broadwick.model.BroadwickModelTestSuite

setUpClass() - Static method in class broadwick.phylo.BroadwickPhyloTestSuite

setUpClass() - Static method in class broadwick.phylo.NewickTreeParserTest

setUpClass() - Static method in class broadwick.rng.BroadwickRngTestSuite

setUpClass() - Static method in class broadwick.simulation.BroadwickSimulationTestSuite

setUpClass() - Static method in class broadwick.simulation.mcmc.BroadwickSimulationMCMCTestSuite

setUpClass() - Static method in class broadwick.statistics.BroadwickStatisticsTestSuite

setUpClass() - Static method in class broadwick.statistics.distributions.BroadwickStatisticsDistributionsTestSuite

setUpClass() - Static method in class broadwick.statistics.distributions.IntegerDistributionTest

setUpClass() - Static method in class broadwick.statistics.SamplesTest

setUpClass() - Static method in class broadwick.stochastic.algorithms.BroadwickStochasticAlgorithmsTestSuite

setUpClass() - Static method in class broadwick.stochastic.BroadwickStochasticTestSuite

setUpClass() - Static method in class broadwick.stochastic.StochasticSimulatorTest

setUpClass() - Static method in class broadwick.utils.ArrayUtilsTest

setUpClass() - Static method in class broadwick.utils.BroadwickUtilsTestSuite

simulatorImpl - Variable in class broadwick.stochastic.StochasticSimulatorTest

started() - Method in class broadwick.stochastic.StochasticSimulatorTest.ObserverImpl

step() - Method in class broadwick.stochastic.StochasticSimulatorTest.ObserverImpl

StochasticSimulatorImpl() - Constructor for class broadwick.stochastic.StochasticSimulatorTest.StochasticSimulatorImpl

StochasticSimulatorTest - Class in broadwick.stochastic

Test cases for broadwick.stochastic.StochasticSimulator class.

StochasticSimulatorTest() - Constructor for class broadwick.stochastic.StochasticSimulatorTest

StochasticSimulatorTest.ObserverImpl - Class in broadwick.stochastic

Simple observer class that does the following:

StochasticSimulatorTest.StochasticSimulatorImpl - Class in broadwick.stochastic

T

tearDown() - Method in class broadwick.BroadwickTestSuite

tearDown() - Method in class broadwick.CliOptionsTest

tearDown() - Method in class broadwick.config.BroadwickConfigTestSuite

tearDown() - Method in class broadwick.config.ConfigValidationErrorsTest

tearDown() - Method in class broadwick.config.ConfigValidatorTest

tearDown() - Method in class broadwick.data.BroadwickDataTestSuite

tearDown() - Method in class broadwick.data.DataReaderTest

tearDown() - Method in class broadwick.graph.BroadwickGraphTestSuite

tearDown() - Method in class broadwick.graph.DepthFirstIteratorTest

tearDown() - Method in class broadwick.grid.BroadwickGridTestSuite

tearDown() - Method in class broadwick.io.BroadwickIoTestSuite

tearDown() - Method in class broadwick.io.FileInputTest

tearDown() - Method in class broadwick.io.FileOutputTest

tearDown() - Method in class broadwick.io.FileUtilsTest

tearDown() - Method in class broadwick.model.BroadwickModelTestSuite

tearDown() - Method in class broadwick.phylo.BroadwickPhyloTestSuite

tearDown() - Method in class broadwick.phylo.NewickTreeParserTest

tearDown() - Method in class broadwick.rng.BroadwickRngTestSuite

tearDown() - Method in class broadwick.simulation.BroadwickSimulationTestSuite

tearDown() - Method in class broadwick.simulation.mcmc.BroadwickSimulationMCMCTestSuite

tearDown() - Method in class broadwick.statistics.BroadwickStatisticsTestSuite

tearDown() - Method in class broadwick.statistics.distributions.BroadwickStatisticsDistributionsTestSuite

tearDown() - Method in class broadwick.statistics.distributions.IntegerDistributionTest

tearDown() - Method in class broadwick.statistics.SamplesTest

tearDown() - Method in class broadwick.stochastic.algorithms.BroadwickStochasticAlgorithmsTestSuite

tearDown() - Method in class broadwick.stochastic.BroadwickStochasticTestSuite

tearDown() - Method in class broadwick.stochastic.StochasticSimulatorTest

tearDown() - Method in class broadwick.utils.ArrayUtilsTest

tearDown() - Method in class broadwick.utils.BroadwickUtilsTestSuite

tearDownClass() - Static method in class broadwick.BroadwickTestSuite

tearDownClass() - Static method in class broadwick.CliOptionsTest

tearDownClass() - Static method in class broadwick.config.BroadwickConfigTestSuite

tearDownClass() - Static method in class broadwick.config.ConfigValidationErrorsTest

tearDownClass() - Static method in class broadwick.config.ConfigValidatorTest

tearDownClass() - Static method in class broadwick.data.BroadwickDataTestSuite

tearDownClass() - Static method in class broadwick.data.DataReaderTest

tearDownClass() - Static method in class broadwick.graph.BroadwickGraphTestSuite

tearDownClass() - Static method in class broadwick.graph.DepthFirstIteratorTest

tearDownClass() - Static method in class broadwick.grid.BroadwickGridTestSuite

tearDownClass() - Static method in class broadwick.io.BroadwickIoTestSuite

tearDownClass() - Static method in class broadwick.io.FileInputTest

tearDownClass() - Static method in class broadwick.io.FileOutputTest

tearDownClass() - Static method in class broadwick.io.FileUtilsTest

tearDownClass() - Static method in class broadwick.model.BroadwickModelTestSuite

tearDownClass() - Static method in class broadwick.phylo.BroadwickPhyloTestSuite

tearDownClass() - Static method in class broadwick.phylo.NewickTreeParserTest

tearDownClass() - Static method in class broadwick.rng.BroadwickRngTestSuite

tearDownClass() - Static method in class broadwick.simulation.BroadwickSimulationTestSuite

tearDownClass() - Static method in class broadwick.simulation.mcmc.BroadwickSimulationMCMCTestSuite

tearDownClass() - Static method in class broadwick.statistics.BroadwickStatisticsTestSuite

tearDownClass() - Static method in class broadwick.statistics.distributions.BroadwickStatisticsDistributionsTestSuite

tearDownClass() - Static method in class broadwick.statistics.distributions.IntegerDistributionTest

tearDownClass() - Static method in class broadwick.statistics.SamplesTest

tearDownClass() - Static method in class broadwick.stochastic.algorithms.BroadwickStochasticAlgorithmsTestSuite

tearDownClass() - Static method in class broadwick.stochastic.BroadwickStochasticTestSuite

tearDownClass() - Static method in class broadwick.stochastic.StochasticSimulatorTest

tearDownClass() - Static method in class broadwick.utils.ArrayUtilsTest

tearDownClass() - Static method in class broadwick.utils.BroadwickUtilsTestSuite

testAdd() - Method in class broadwick.statistics.distributions.IntegerDistributionTest

Test of add method, of class IntegerDistribution.

testAdd_double() - Method in class broadwick.statistics.SamplesTest

Test of add method, of class Samples.

testAdd_Samples() - Method in class broadwick.statistics.SamplesTest

Test of add method, of class Samples.

testAddElement() - Method in class broadwick.data.DataReaderTest

Test of updateSectionDefiniton method, of class DataReader.

testAddError_String() - Method in class broadwick.config.ConfigValidationErrorsTest

Test of addError method, of class ConfigValidationErrors.

testAddObserver() - Method in class broadwick.stochastic.StochasticSimulatorTest

testClear() - Method in class broadwick.statistics.SamplesTest

Test of clear method, of class Samples.

testClose() - Method in class broadwick.data.DataReaderTest

Test of close method, of class DataReader.

testclose() - Method in class broadwick.io.FileInputTest

testClose() - Method in class broadwick.io.FileOutputTest

testCopy() - Method in class broadwick.statistics.distributions.IntegerDistributionTest

Test of copy method, of class IntegerDistribution.

testDoThetaEvent() - Method in class broadwick.stochastic.StochasticSimulatorTest

testFileName - Static variable in class broadwick.phylo.NewickTreeParserTest

testFlush() - Method in class broadwick.io.FileOutputTest

testGetBinContents() - Method in class broadwick.statistics.distributions.IntegerDistributionTest

Test of getBinContents method, of class IntegerDistribution.

testGetBins() - Method in class broadwick.statistics.distributions.IntegerDistributionTest

Test of getBins method, of class IntegerDistribution.

testGetConfigurationFileName() - Method in class broadwick.CliOptionsTest

Test of getConfigurationFileName method, of class CliOptions.

testGetData() - Method in class broadwick.statistics.distributions.IntegerDistributionTest

Test of getData method, of class IntegerDistribution.

testGetFileExtension() - Method in class broadwick.io.FileUtilsTest

testGetGeometricMean() - Method in class broadwick.statistics.SamplesTest

Test of getGeometricMean method, of class Accumulator.

testGetHarmonicMean() - Method in class broadwick.statistics.SamplesTest

Test of getHarmonicMean method, of class Accumulator.

testGetLookup() - Method in class broadwick.data.DataReaderTest

Test of getLookup method, of class DataReader.

testGetMean() - Method in class broadwick.statistics.SamplesTest

Test of getMean method, of class Accumulator.

testGetName() - Method in class broadwick.stochastic.StochasticSimulatorTest

testGetNextThetaEventTime() - Method in class broadwick.stochastic.StochasticSimulatorTest

testGetNumBins() - Method in class broadwick.statistics.distributions.IntegerDistributionTest

Test of getNumBins method, of class IntegerDistribution.

testGetRandomBin() - Method in class broadwick.statistics.distributions.IntegerDistributionTest

Test of getRandomBin method, of class IntegerDistribution.

testGetRootMeanSquare() - Method in class broadwick.statistics.SamplesTest

Test of getRootMeanSquare method, of class Accumulator.

testGetSize() - Method in class broadwick.statistics.SamplesTest

Test of getSize method, of class Accumulator.

testGetStdDev() - Method in class broadwick.statistics.SamplesTest

Test of getStdDev method, of class Accumulator.

testGetSum() - Method in class broadwick.statistics.SamplesTest

Test of getSum method, of class Accumulator.

testGetSumCounts() - Method in class broadwick.statistics.distributions.IntegerDistributionTest

Test of getSumCounts method, of class IntegerDistribution.

testGetSummary() - Method in class broadwick.statistics.SamplesTest

Test of getSummary method, of class Samples.

testGetVariance() - Method in class broadwick.statistics.SamplesTest

Test of getVariance method, of class Accumulator.

testHasNext() - Method in class broadwick.graph.DepthFirstIteratorTest

Test of hasNext method, of class DepthFirstIterator.

testMax() - Method in class broadwick.utils.ArrayUtilsTest

Test of max method, of class ArrayUtils.

testNext() - Method in class broadwick.graph.DepthFirstIteratorTest

Test of next method, of class DepthFirstIterator.

testNormaliseBins() - Method in class broadwick.statistics.distributions.IntegerDistributionTest

Test of normaliseBins method, of class IntegerDistribution.

testParse() - Method in class broadwick.phylo.NewickTreeParserTest

testParseWithArg() - Method in class broadwick.phylo.NewickTreeParserTest

testRead() - Method in class broadwick.io.FileInputTest

testReadDataSection() - Method in class broadwick.data.DataReaderTest

Test of readDataSection method, of class DataReader.

testReadNextLine() - Method in class broadwick.io.FileInputTest

testReadNextLineAsTokensUsingCommaSeparator() - Method in class broadwick.io.FileInputTest

testReadNextLineAsTokensUsingDefaultSeparator() - Method in class broadwick.io.FileInputTest

testRemove() - Method in class broadwick.graph.DepthFirstIteratorTest

Test of remove method, of class DepthFirstIterator.

testRenameFileExtension() - Method in class broadwick.io.FileUtilsTest

testReset_0args() - Method in class broadwick.statistics.distributions.IntegerDistributionTest

Test of reset method, of class IntegerDistribution.

testReset_int() - Method in class broadwick.statistics.distributions.IntegerDistributionTest

Test of reset method, of class IntegerDistribution.

testSaveToFile_3args() - Method in class broadwick.io.FileOutputTest

testSaveToFile_4args() - Method in class broadwick.io.FileOutputTest

testScale() - Method in class broadwick.utils.ArrayUtilsTest

Test of scale method, of class ArrayUtils.

testScale2() - Method in class broadwick.utils.ArrayUtilsTest

Test of scale method, of class ArrayUtils.

testScaleBins() - Method in class broadwick.statistics.distributions.IntegerDistributionTest

Test of scaleBins method, of class IntegerDistribution.

testSetData_Integer() - Method in class broadwick.statistics.distributions.IntegerDistributionTest

Test of setData method, of class IntegerDistribution.

testSetData_Integer_Integer() - Method in class broadwick.statistics.distributions.IntegerDistributionTest

Test of setData method, of class IntegerDistribution.

testsFileName - Static variable in class broadwick.io.FileInputTest

testsFileName - Static variable in class broadwick.io.FileOutputTest

testSize() - Method in class broadwick.statistics.distributions.IntegerDistributionTest

Test of size method, of class IntegerDistribution.

testSum() - Method in class broadwick.utils.ArrayUtilsTest

Test of sum method, of class ArrayUtils.

testToArray() - Method in class broadwick.statistics.distributions.IntegerDistributionTest

Test of toArray method, of class IntegerDistribution.

testToCollectionStrings() - Method in class broadwick.utils.ArrayUtilsTest

Test of toStringArray method, of class ArrayUtils.

testToCsv() - Method in class broadwick.statistics.distributions.IntegerDistributionTest

Test of toCsv method, of class IntegerDistribution.

testToLongArray() - Method in class broadwick.statistics.distributions.IntegerDistributionTest

Test of toLongArray method, of class IntegerDistribution.

testToString() - Method in class broadwick.statistics.distributions.IntegerDistributionTest

Test of toString method, of class IntegerDistribution.

testToStringArray() - Method in class broadwick.utils.ArrayUtilsTest

Test of toStringArray method, of class ArrayUtils.

testToStringArrayWithToken() - Method in class broadwick.utils.ArrayUtilsTest

Test of toStringArray method, of class ArrayUtils.

testValidCommandLineArguments() - Method in class broadwick.CliOptionsTest

Test of getConfigurationFileName method with the generate-file option, of class CliOptions.

testWrite_String() - Method in class broadwick.io.FileOutputTest

testWrite_String_ObjectArr() - Method in class broadwick.io.FileOutputTest

theta(double, Collection<Object>) - Method in class broadwick.stochastic.StochasticSimulatorTest.ObserverImpl

thetas - Variable in class broadwick.stochastic.StochasticSimulatorTest.ObserverImpl

W

watchman - Variable in class broadwick.CliOptionsTest

watchman - Variable in class broadwick.config.ConfigValidationErrorsTest

watchman - Variable in class broadwick.config.ConfigValidatorTest

watchman - Variable in class broadwick.data.DataReaderTest

watchman - Variable in class broadwick.graph.DepthFirstIteratorTest

watchman - Variable in class broadwick.io.FileInputTest

watchman - Variable in class broadwick.io.FileOutputTest

watchman - Variable in class broadwick.io.FileUtilsTest

watchman - Variable in class broadwick.phylo.NewickTreeParserTest

watchman - Variable in class broadwick.statistics.distributions.IntegerDistributionTest

watchman - Variable in class broadwick.statistics.SamplesTest

watchman - Variable in class broadwick.stochastic.StochasticSimulatorTest

watchman - Variable in class broadwick.utils.ArrayUtilsTest

A B C D E F G I N O P R S T W